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set_selectedAnnotation(TextAnnotation)
- Method in class fr.orsay.lri.varna.
VARNAPanel
setAutoCenter(boolean)
- Method in class fr.orsay.lri.varna.
VARNAPanel
Sets the current state of auto centering mode.
setBackboneColor(Color)
- Method in class fr.orsay.lri.varna.
VARNAPanel
Sets the color to be used for drawing backbone interactions.
setBackground(Color)
- Method in class fr.orsay.lri.varna.
VARNAPanel
Sets the background color
setBaseFontSize(Float)
- Method in class fr.orsay.lri.varna.
VARNAPanel
Sets the font size for displaying bases
setBaseFontStyle(int)
- Method in class fr.orsay.lri.varna.
VARNAPanel
Sets the font style for displaying bases
setBaseInnerColor(Color)
- Method in class fr.orsay.lri.varna.
VARNAPanel
setBaseNameColor(Color)
- Method in class fr.orsay.lri.varna.
VARNAPanel
setBaseNumbersColor(Color)
- Method in class fr.orsay.lri.varna.
VARNAPanel
setBaseOutlineColor(Color)
- Method in class fr.orsay.lri.varna.
VARNAPanel
setBondColor(Color)
- Method in class fr.orsay.lri.varna.
VARNAPanel
Sets the color used to display hydrogen bonds (base pairings)
setBorderSize(Dimension)
- Method in class fr.orsay.lri.varna.
VARNAPanel
Sets the size of the border, i.e.
setBPHeightIncrement(double)
- Method in class fr.orsay.lri.varna.
VARNAPanel
Sets the base pair height increment, i.e.
setBPStyle(VARNAConfig.BP_STYLE)
- Method in class fr.orsay.lri.varna.
VARNAPanel
Sets the base-pair representation style
setColorGapsBases(boolean)
- Method in class fr.orsay.lri.varna.
VARNAPanel
Toggles on/off using a special color used for drawing "Gaps" bases in comparison mode
setColorNonStandardBases(boolean)
- Method in class fr.orsay.lri.varna.
VARNAPanel
Toggles on/off using a special color used for drawing "non-standard" bases
setDefaultBPColor(Color)
- Method in class fr.orsay.lri.varna.
VARNAPanel
Sets the new color to be used for hydrogen bonds (base pairings)
setErrorsOn(boolean)
- Method in class fr.orsay.lri.varna.
VARNAPanel
Sets whether errors are to be displayed
setFlatExteriorLoop(boolean)
- Method in class fr.orsay.lri.varna.
VARNAPanel
setGapsBasesColor(Color)
- Method in class fr.orsay.lri.varna.
VARNAPanel
Sets the color to use for 'Gaps' bases in comparison mode
setLastSelectedPosition(Point2D.Double)
- Method in class fr.orsay.lri.varna.
VARNAPanel
setModifiable(boolean)
- Method in class fr.orsay.lri.varna.
VARNAPanel
Toggles modifications on and off
setNearestBase(Integer)
- Method in class fr.orsay.lri.varna.
VARNAPanel
Sets the index of the currently selected base.
setNonStandardBasesColor(Color)
- Method in class fr.orsay.lri.varna.
VARNAPanel
Sets the color used to draw non-standard bases
setNumbersFontSize(Float)
- Method in class fr.orsay.lri.varna.
VARNAPanel
Sets the font size for displaying base numbers
setNumPeriod(int)
- Method in class fr.orsay.lri.varna.
VARNAPanel
Sets the distance between consecutive base numbers.
setRealCoords(Point2D.Double[])
- Method in class fr.orsay.lri.varna.
VARNAPanel
Sets the coordinates of the currently displayed RNA
setRNA(RNA)
- Method in class fr.orsay.lri.varna.
VARNAPanel
Sets the RNA to be displayed within this Panel.
setScaleFactor(double)
- Method in class fr.orsay.lri.varna.
VARNAPanel
Sets the scale factor used by the autofitting function
setSelectedBase(int)
- Method in class fr.orsay.lri.varna.
VARNAPanel
Sets the selected base index
setShowNonCanonicalBP(boolean)
- Method in class fr.orsay.lri.varna.
VARNAPanel
Toggles on/off displaying non-canonical base-pairs
setShowNonPlanarBP(boolean)
- Method in class fr.orsay.lri.varna.
VARNAPanel
Toggles on/off displaying "non-planar" base-pairs
setShowWarnings(boolean)
- Method in class fr.orsay.lri.varna.
VARNAPanel
Toggles on/off displaying warnings
setTitle(String)
- Method in class fr.orsay.lri.varna.
VARNAPanel
Sets the panel's title, giving a short description of the RNA secondary structure.
setTitleColor(Color)
- Method in class fr.orsay.lri.varna.
VARNAPanel
Sets the color used to draw the title
setTitleFont(Font)
- Method in class fr.orsay.lri.varna.
VARNAPanel
Sets the font used for rendering the title.
setTitleFontColor(Color)
- Method in class fr.orsay.lri.varna.
VARNAPanel
Sets the color to be used for the title.
setTitleFontFamily(String)
- Method in class fr.orsay.lri.varna.
VARNAPanel
Sets the new font family to be used for the title.
setTitleFontSize(float)
- Method in class fr.orsay.lri.varna.
VARNAPanel
Sets the new size of the title font.
setTitleFontStyle(int)
- Method in class fr.orsay.lri.varna.
VARNAPanel
Sets the new style of the title font.
setTranslation(Point)
- Method in class fr.orsay.lri.varna.
VARNAPanel
Sets the translation used for zooming in and out
setUseBaseColorsForBPs(boolean)
- Method in class fr.orsay.lri.varna.
VARNAPanel
Toggles on/off using base inner color for drawing base-pairs
setZoom(Object)
- Method in class fr.orsay.lri.varna.
VARNAPanel
Sets the current zoom factor
setZoomIncrement(Object)
- Method in class fr.orsay.lri.varna.
VARNAPanel
Sets the atomic zoom factor step, or increment.
setZoomIncrement(double)
- Method in class fr.orsay.lri.varna.
VARNAPanel
Sets the atomic zoom factor step, or increment.
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