A C D E F G H I P R S T V

S

set_selectedAnnotation(TextAnnotation) - Method in class fr.orsay.lri.varna.VARNAPanel
 
setAutoCenter(boolean) - Method in class fr.orsay.lri.varna.VARNAPanel
Sets the current state of auto centering mode.
setBackboneColor(Color) - Method in class fr.orsay.lri.varna.VARNAPanel
Sets the color to be used for drawing backbone interactions.
setBackground(Color) - Method in class fr.orsay.lri.varna.VARNAPanel
Sets the background color
setBaseFontSize(Float) - Method in class fr.orsay.lri.varna.VARNAPanel
Sets the font size for displaying bases
setBaseFontStyle(int) - Method in class fr.orsay.lri.varna.VARNAPanel
Sets the font style for displaying bases
setBaseInnerColor(Color) - Method in class fr.orsay.lri.varna.VARNAPanel
 
setBaseNameColor(Color) - Method in class fr.orsay.lri.varna.VARNAPanel
 
setBaseNumbersColor(Color) - Method in class fr.orsay.lri.varna.VARNAPanel
 
setBaseOutlineColor(Color) - Method in class fr.orsay.lri.varna.VARNAPanel
 
setBondColor(Color) - Method in class fr.orsay.lri.varna.VARNAPanel
Sets the color used to display hydrogen bonds (base pairings)
setBorderSize(Dimension) - Method in class fr.orsay.lri.varna.VARNAPanel
Sets the size of the border, i.e.
setBPHeightIncrement(double) - Method in class fr.orsay.lri.varna.VARNAPanel
Sets the base pair height increment, i.e.
setBPStyle(VARNAConfig.BP_STYLE) - Method in class fr.orsay.lri.varna.VARNAPanel
Sets the base-pair representation style
setColorGapsBases(boolean) - Method in class fr.orsay.lri.varna.VARNAPanel
Toggles on/off using a special color used for drawing "Gaps" bases in comparison mode
setColorNonStandardBases(boolean) - Method in class fr.orsay.lri.varna.VARNAPanel
Toggles on/off using a special color used for drawing "non-standard" bases
setDefaultBPColor(Color) - Method in class fr.orsay.lri.varna.VARNAPanel
Sets the new color to be used for hydrogen bonds (base pairings)
setErrorsOn(boolean) - Method in class fr.orsay.lri.varna.VARNAPanel
Sets whether errors are to be displayed
setFlatExteriorLoop(boolean) - Method in class fr.orsay.lri.varna.VARNAPanel
 
setGapsBasesColor(Color) - Method in class fr.orsay.lri.varna.VARNAPanel
Sets the color to use for 'Gaps' bases in comparison mode
setLastSelectedPosition(Point2D.Double) - Method in class fr.orsay.lri.varna.VARNAPanel
 
setModifiable(boolean) - Method in class fr.orsay.lri.varna.VARNAPanel
Toggles modifications on and off
setNearestBase(Integer) - Method in class fr.orsay.lri.varna.VARNAPanel
Sets the index of the currently selected base.
setNonStandardBasesColor(Color) - Method in class fr.orsay.lri.varna.VARNAPanel
Sets the color used to draw non-standard bases
setNumbersFontSize(Float) - Method in class fr.orsay.lri.varna.VARNAPanel
Sets the font size for displaying base numbers
setNumPeriod(int) - Method in class fr.orsay.lri.varna.VARNAPanel
Sets the distance between consecutive base numbers.
setRealCoords(Point2D.Double[]) - Method in class fr.orsay.lri.varna.VARNAPanel
Sets the coordinates of the currently displayed RNA
setRNA(RNA) - Method in class fr.orsay.lri.varna.VARNAPanel
Sets the RNA to be displayed within this Panel.
setScaleFactor(double) - Method in class fr.orsay.lri.varna.VARNAPanel
Sets the scale factor used by the autofitting function
setSelectedBase(int) - Method in class fr.orsay.lri.varna.VARNAPanel
Sets the selected base index
setShowNonCanonicalBP(boolean) - Method in class fr.orsay.lri.varna.VARNAPanel
Toggles on/off displaying non-canonical base-pairs
setShowNonPlanarBP(boolean) - Method in class fr.orsay.lri.varna.VARNAPanel
Toggles on/off displaying "non-planar" base-pairs
setShowWarnings(boolean) - Method in class fr.orsay.lri.varna.VARNAPanel
Toggles on/off displaying warnings
setTitle(String) - Method in class fr.orsay.lri.varna.VARNAPanel
Sets the panel's title, giving a short description of the RNA secondary structure.
setTitleColor(Color) - Method in class fr.orsay.lri.varna.VARNAPanel
Sets the color used to draw the title
setTitleFont(Font) - Method in class fr.orsay.lri.varna.VARNAPanel
Sets the font used for rendering the title.
setTitleFontColor(Color) - Method in class fr.orsay.lri.varna.VARNAPanel
Sets the color to be used for the title.
setTitleFontFamily(String) - Method in class fr.orsay.lri.varna.VARNAPanel
Sets the new font family to be used for the title.
setTitleFontSize(float) - Method in class fr.orsay.lri.varna.VARNAPanel
Sets the new size of the title font.
setTitleFontStyle(int) - Method in class fr.orsay.lri.varna.VARNAPanel
Sets the new style of the title font.
setTranslation(Point) - Method in class fr.orsay.lri.varna.VARNAPanel
Sets the translation used for zooming in and out
setUseBaseColorsForBPs(boolean) - Method in class fr.orsay.lri.varna.VARNAPanel
Toggles on/off using base inner color for drawing base-pairs
setZoom(Object) - Method in class fr.orsay.lri.varna.VARNAPanel
Sets the current zoom factor
setZoomIncrement(Object) - Method in class fr.orsay.lri.varna.VARNAPanel
Sets the atomic zoom factor step, or increment.
setZoomIncrement(double) - Method in class fr.orsay.lri.varna.VARNAPanel
Sets the atomic zoom factor step, or increment.

A C D E F G H I P R S T V