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_RNA
fr.orsay.lri.varna.models.rna.RNA _RNA
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_debug
boolean _debug
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_conf
fr.orsay.lri.varna.models.VARNAConfig _conf
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_VARNAListeners
java.util.ArrayList<E> _VARNAListeners
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_selectionListeners
java.util.ArrayList<E> _selectionListeners
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_RNAListeners
java.util.ArrayList<E> _RNAListeners
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_basesListeners
java.util.ArrayList<E> _basesListeners
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_manager
javax.swing.undo.UndoManager _manager
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_realCoords
java.awt.geom.Point2D.Double[] _realCoords
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_realCenters
java.awt.geom.Point2D.Double[] _realCenters
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_scaleFactor
double _scaleFactor
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_offsetPanel
java.awt.geom.Point2D.Double _offsetPanel
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_offsetRNA
java.awt.geom.Point2D.Double _offsetRNA
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_offX
double _offX
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_offY
double _offY
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_blink
fr.orsay.lri.varna.controlers.ControleurBlinkingThread _blink
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_selectedBases
fr.orsay.lri.varna.models.BaseList _selectedBases
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_backupSelection
java.util.ArrayList<E> _backupSelection
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_nearestBase
java.lang.Integer _nearestBase
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_lastSelectedCoord
java.awt.geom.Point2D.Double _lastSelectedCoord
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_linkOrigin
java.awt.geom.Point2D.Double _linkOrigin
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_linkDestination
java.awt.geom.Point2D.Double _linkDestination
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_selectionRectangle
java.awt.Rectangle _selectionRectangle
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_highlightAnnotation
boolean _highlightAnnotation
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_titleHeight
int _titleHeight
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_border
java.awt.Dimension _border
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_drawBBox
boolean _drawBBox
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_drawBorder
boolean _drawBorder
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_translation
java.awt.Point _translation
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_horsCadre
boolean _horsCadre
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_premierAffichage
boolean _premierAffichage
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_interpolator
fr.orsay.lri.varna.controlers.ControleurInterpolator _interpolator
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_popup
fr.orsay.lri.varna.views.VueMenu _popup
If comparison mode is TRUE (ON), then the application will be used to
display a super-structure resulting on an RNA secondary structure
comparison. Else, the application is used by default.
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_UI
fr.orsay.lri.varna.views.VueUI _UI
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_selectedAnnotation
fr.orsay.lri.varna.models.annotations.TextAnnotation _selectedAnnotation
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_target
java.awt.geom.Point2D.Double _target
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_target2
java.awt.geom.Point2D.Double _target2
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_hoveredBase
fr.orsay.lri.varna.models.rna.ModeleBase _hoveredBase